Ingredient Details :4-amino-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]pyrimidin-2-one; 1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]-4-hydroxy-hexahydropyrimidin-2-one; 1-[(2R,5R)-5-ethynyl-5-(hydroxymethyl)-2H-furan-2-yl]-5-methyl-pyrimidine-2,4-dione


TCMI-ID: TCMI07807


Physicochemical Property
Ingredient Name 4-amino-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]pyrimidin-2-one; 1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]-4-hydroxy-hexahydropyrimidin-2-one; 1-[(2R,5R)-5-ethynyl-5-(hydroxymethyl)-2H-furan-2-yl]-5-methyl-pyrimidine-2,4-dione
Pubchem CID 3013329
Iupac name 4-amino-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidin-2-one;1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-4-hydroxy-1,3-diazinan-2-one;1-[(2R,5R)-5-ethynyl-5-(hydroxymethyl)-2H-furan-2-yl]-5-methylpyrimidine-2,4-dione
Molecular Formula C30H41N7O14
Molecular Weight 723.7
Isomeric smiles CC1=CN(C(=O)NC1=O)[C@H]2C=C[C@](O2)(CO)C#C.C1CN(C(=O)NC1O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO)O)O.C1[C@@H]([C@H](O[C@H]1N2C=CC(=NC2=O)N)CO)O
InChI InChI=1S/C12H12N2O4.C9H13N3O4.C9H16N2O6/c1-3-12(7-15)5-4-9(18-12)14-6-8(2)10(16)13-11(14)17;10-7-1-2-12(9(15)11-7)8-3-5(14)6(4-13)16-8;12-3-4-6(14)7(15)8(17-4)11-2-1-5(13)10-9(11)16/h1,4-6,9,15H,7H2,2H3,(H,13,16,17);1-2,5-6,8,13-14H,3-4H2,(H2,10,11,15);4-8,12-15H,1-3H2,(H,10,16)/t9-,12+;5-,6+,8+;4-,5?,6-,7-,8-/m101/s1
InChIKey DQAUPEHSTBDYQS-QTDUCIPTSA-N
External Database Links
Structural Information
nHA(Number of hydrogen bond acceptors) 21
nHD(Number of hydrogen bond donors) 11
nRot(Number of rotatable bonds) 6
nRing(Number of rings) 6
MaxRing(Number of atoms in the biggest ring) 6
nHet(Number of heteroatoms) 21

Stability
nRig(Number of rigid bonds) 38
Flexibility 0.158
Stereo Centers(Number of stereocenters) 10

Solubility
TPSA(Topological polar surface area) 317.41
logS(The logarithm of aqueous solubility value) -1.507
logP(The logarithm of the n-octanol/water distribution coefficient) -2.189
logD7.4(The logarithm of the n-octanol/water distribution coefficients at pH=7.4) -1.603

Pharmacokinetic Property
Quantitative Estimate of Drug-likeness 0.098
Synthetic accessibility score 5.623
Natural Product-likeness score 0.986
Lipinski Rule Rejected
GSK Rule Rejected
Golden Triangle Rejected

Absorption
Caco-2 Permeability -6.49
MDCK Permeability 6.12E-05
Pgp-substrate 0.949
HIA(human intestinal absorption) 0.976
F20%(20% Oral Bioavailability) 0.999
F30%(30% Oral Bioavailability) 1

Distribution
PPB(Plasma protein binding) 30.33%
VD(Volume Distribution) 0.252
BBB Penetration(Blood brain barrier penetration) 0.447
B3 Penetration(Blood brain barrier penetration) Non-Permeable
Fu(The fraction unbound in plasms) 62.43%

Metabolism
CYP1A2 inhibitor 0.001
CYP1A2 substrate 0.051
CYP2C19 inhibitor 0.019
CYP2C19 substrate 0.049
CYP2C9 inhibitor 0.004
CYP2C9 substrate 0.071
CYP2D6 inhibitor 0.007
CYP2D6 substrate 0.043
CYP3A4 inhibitor 0.004
CYP3A4 substrate 0.029

Excretion
CL(The clearance of a drug) 1.7
T1/2 0.854

Toxicology
NonBiodegradable Rule 1
Pfizer Rule Accepted
SR-MMP 0.115

Toxic Dose
FDAMDD(FDA Maximum (Recommended) Daily Dose) 0.044
IGC50 0.553
LC50FM 1.972
LC50DM 1.88

Reproductive Effects
NR-AR(Androgen receptor) 0.003
NR-AR-LBD(Androgen receptor) 0.003
NR-Aromatase 0.014
NR-ER(Estrogen receptor) 0.246
NR-ER-LBD(Estrogen receptor) 0.181

Allergy
Skin Sensitization Rule 2
Skin Sensitization 0.017

Acute Toxicity
Acute Toxicity Rule 0
Rat Oral Acute Toxicity 0

Organ Toxicity
hERG Blockers 0.014
H-HT(The human hepatotoxicity) 0.988
DILI(Drug-induced liver injury) 0.998

Primary Irritation
Eye Corrosion 0.003
Eye Irritation 0.003
Respiratory Toxicity 0.001

Mutagenic Effects
AMES Toxicity 0.056

Tumorigenic Effects
Carcinogencity 0.013
SR-ARE(Antioxidant Response Element) 0.875
SR-ATAD5(ATPase family AAA domain-containing protein 5) 0.033
SR-p53 0.943

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