CHI : 痴 : Dementia DAI :呆 : Stupid WANG : 忘 :Forgetful
Basic information
TCMD-ID
Disease English Name
Disease Chinese Name
Stage
Differentially expressed genes analysed as potential targets for Alzheimer's disease by the limma package in R, GEO2R in GEO.
Basic information
TCMGE-ID
Gene symbol
Gene Ensembl ID
Gene ID
log2FoldChange
Braak Stage
Brain zone
GSE
Formulary information from the Chinese Medical Dictionary(中华医典), Chinese Medicine Think Tank(中医智库), Chinese Medicine Ancient Books Catalogue(中国中医古籍总目).
Basic information
TCMF-ID
Formula Name Chinese
Formula Name English
Herbs Name Chinese
Herbs Name English
Source
Original text
TCM information from Chinese Pharmacopoeia(中国药典), Dictionary of Traditional Chinese Medicine Formulas(中药大辞典), TCMSP, ITCM, TM-MC2.0, TCM-ID, TCM-Suite, ETCM2.0, SYMMAP2.0, HERB2.0, HIT2.0 .
Basic information
TCMH-ID
Herb Chinese Name
Herb Latin Name
Herb PinYin Name
Type
Description
Property
Flavor
Meridian
Indications
Habitat
Collection Time
Appearance
Specifications
Ingredient information was obtained from TCMSP, ITCM, TM-MC2.0, TCM-ID, TCM-Suite, ETCM2.0, SYMMAP2.0, HERB2.0, HIT2.0, BATMAN-TCM2.0, DrugBank, ChEMBL, PubChem .
Ingredient's ADMET information was predicted by ADMETlab 2.0and DeepB3
Basic information
TCMI-ID
Ingredient Name
Pubchem CID
Iupac name
Molecular Formula
Molecular Weight
Isomeric smiles
InChI
InChIKey
External Database Links
Ingredient's ADMET information
Target information was obtained from TCMSP, ITCM, TM-MC2.0, TCM-ID, TCM-Suite, ETCM2.0, SYMMAP2.0, HERB2.0, HIT2.0, BATMAN-TCM2.0, DrugBank, ChEMBL, SwissTargetPrediction, Similarity ensemble approach (SEA) .
Basic information
TCMT-ID
Target Name
Gene ID
Gene Name
External Database Links
Users can search five types of data provided by the TCM-ADIP database, including TCM-Disorder, Disorder-Gene, TCM-Formula, TCM-Herb, TCM-Ingredient,and TCM-Target on the ‘Search’ page.
Each search takes about 1 second.
Click on the brain region you're interested in, after which you'll be able to view gene expression in that region.
This brain model is from Society for Neuroscience (2017) .
This interactive web-based application encapsulates the clusterProfiler package in R.
Users can upload Differential Gene Expression (DGE) data analysed by DESeq2, limma, GEO2R or differential gene data provided by the sequencing company.
Visuals produced include dot plots, wordclouds, category net plots, enrichment map plots, GO induced graphs, and enriched KEGG pathway plots using the Pathview package.
Importantly, user can modify the drawing parameters to meet your aesthetic and publishing requirements.
1.Click on the example file or upload your own differential gene expression data
2.Select the relevant column data
3.Select the name of the species analysed
4.Click the create enrich object button
This step of the R analysis is expected to take 60-70 seconds
5.After that, you can see the following result graphs, including tabular results, bar graphs, bubble graphs, and upsets for Go enrichment analysis and tabular results, bar graphs, bubble graphs, and upsets for KEGG enrichment analysis, Metabolic Pathway graphs, Volcano graphs, and Word cloud graphs.
6.You can modify the drawing parameters at will in the left menu bar to meet your aesthetic and publishing requirements, after which you can save the image by right clicking on it!
On the BBB-Prediction Tool page, you can upload the SMILE structure of the component for prediction of blood brain barrier permeability prediction