TCMPG

CRISPRCasFinder

Identification of CRISPR arrays and Cas proteins in user submitted sequences.
The CRISPRCasFinder was used to perform the analysis.

Enter Query Sequence
Paste one sequence below (5'->3', string of ACGTNacgtn -- Ns are accepted, IUB/GCG letters (MRWSYKVHDBX) will be converted to Ns. Any other characters will be deleted). FASTA format ok. NOTE: Sequence should not be longer than 2Mb.

CRISPR Advanced Settings

Minimal Repeat Length:

Maximal Repeat Length:

Minimal Spacers size in function of Repeat size:

Maximal Spacers size in function of Repeat size:

Maximal allowed percentage of similarity between Spacers:

Percentage mismatchs allowed between Repeats:

Percentage mismatches allowed for truncated Repeat:

Size of Flanking regions in base pairs (bp) for each analyzed CRISPR array: