TCMPG TCM Plant Genome Database
SSR Finder

SSR Finder

Identify SSRs in user uploaded FASTA file and view SSRs of the TCM plant genome available on our website.
The identification of SSRs was done using Batch_SSR_Finder.pl (Song et al. 2021) with default parameters.
Web SSR Finder
Upload file (max. 10M)
SSR search parameters
SSR motif length
min. no. of repetitions
1
2
3
4
5
6
add further fields
Max. length of sequence between two SSRs to register as compound SSR
 
View SSRs of the TCM plant genome available on our website.
TCMPGID Plant_latin Version SSRs in CDS Genome_details
TCMPG20001 Abies alba 1_1 View SSRs Go to genome page
TCMPG20002 Abrus precatorius Abrus_2018 View SSRs Go to genome page
TCMPG20003 Actinidia chinensis HongYang_v2 View SSRs Go to genome page
TCMPG20004 Actinidia chinensis HongYang_v3 View SSRs Go to genome page
TCMPG20005 Actinidia chinensis Red5 View SSRs Go to genome page
TCMPG20006 Actinidia eriantha White View SSRs Go to genome page
TCMPG20007 Allium sativum NA View SSRs Go to genome page
TCMPG20008 Ananas comosus NA View SSRs Go to genome page
TCMPG20009 Antirrhinum majus IGDBv1 View SSRs Go to genome page
TCMPG20010 Apium graveolens NA View SSRs Go to genome page
TCMPG20011 Aquilaria sinensis NA View SSRs Go to genome page
TCMPG20012 Arachis hypogaea Zhuang View SSRs Go to genome page
TCMPG20013 Arachis hypogaea David View SSRs Go to genome page
TCMPG20014 Artocarpus altilis NA View SSRs Go to genome page
TCMPG20015 Artocarpus heterophyllus NA View SSRs Go to genome page
TCMPG20016 Asparagus officinalis CHR_V1.1 View SSRs Go to genome page
TCMPG20017 Atalantia buxifolia NA View SSRs Go to genome page
TCMPG20018 Averrhoa carambola NA View SSRs Go to genome page
TCMPG20019 Beta vulgaris RefBeet-1.2.2 View SSRs Go to genome page
TCMPG20020 Brassica juncea tumida View SSRs Go to genome page
TCMPG20021 Brassica juncea Varuna View SSRs Go to genome page
TCMPG20022 Brassica nigra YZ12151 View SSRs Go to genome page
TCMPG20023 Brassica nigra Ni100 View SSRs Go to genome page
TCMPG20024 Brassica oleracea var. capitata JZSv1 View SSRs Go to genome page
TCMPG20025 Brassica oleracea var. capitata JZSv2 View SSRs Go to genome page
TCMPG20026 Brassica oleracea var. botrytis HDEM View SSRs Go to genome page
TCMPG20027 Camellia sinensis CSS View SSRs Go to genome page
TCMPG20028 Camellia sinensis CSS_v1.2 View SSRs Go to genome page
TCMPG20029 Camellia sinensis CSS_20200506 View SSRs Go to genome page
TCMPG20030 Camellia sinensis LJ_43 View SSRs Go to genome page
TCMPG20031 Camptotheca acuminata v2.4 View SSRs Go to genome page
TCMPG20032 Cannabis sativa cs10 View SSRs Go to genome page
TCMPG20033 Capsicum annuum CM334 View SSRs Go to genome page
TCMPG20034 Capsicum annuum Zunla View SSRs Go to genome page
TCMPG20035 Carica papaya Papaya1.0 View SSRs Go to genome page
TCMPG20036 Castanea mollissima HBY_2 View SSRs Go to genome page
TCMPG20037 Casuarina equisetifolia NA View SSRs Go to genome page
TCMPG20038 Catharanthus roseus v2 View SSRs Go to genome page
TCMPG20039 Citrus grandis HWB View SSRs Go to genome page
TCMPG20040 Citrus medica XZ View SSRs Go to genome page
TCMPG20041 Citrus reticulata MSYJ View SSRs Go to genome page
TCMPG20042 Citrus sinensis NA View SSRs Go to genome page
TCMPG20043 Citrus unshiu CUMW_v1.0 View SSRs Go to genome page
TCMPG20044 Cocos nucifera NA View SSRs Go to genome page
TCMPG20045 Coffea arabica Cara_1.0 View SSRs Go to genome page
TCMPG20046 Corchorus capsularis CCACVL1_1.0 View SSRs Go to genome page
TCMPG20047 Corchorus olitorius COLO4_1.0 View SSRs Go to genome page
TCMPG20048 Coriandrum sativum NA View SSRs Go to genome page
TCMPG20049 Cucumis melo ASM31304v1 View SSRs Go to genome page
TCMPG20050 Cucumis sativus V3 View SSRs Go to genome page
TCMPG20051 Cucurbita moschata v1 View SSRs Go to genome page
TCMPG20052 Cucurbita pepo ASM280686v2 View SSRs Go to genome page
TCMPG20053 Cuscuta australis NA View SSRs Go to genome page
TCMPG20054 Dalbergia odorifera NA View SSRs Go to genome page
TCMPG20055 Daucus carota ASM162521v1 View SSRs Go to genome page
TCMPG20056 Dianthus caryophyllus r1.0 View SSRs Go to genome page
TCMPG20057 Dionaea muscipula NA View SSRs Go to genome page
TCMPG20058 Dioscorea dumetorum v1.0 View SSRs Go to genome page
TCMPG20059 Diospyros lotus r1.1 View SSRs Go to genome page
TCMPG20060 Elaeis guineensis EG5 View SSRs Go to genome page
TCMPG20061 Erigeron breviscapus NA View SSRs Go to genome page
TCMPG20062 Eriobotrya japonica NA View SSRs Go to genome page
TCMPG20063 Eschscholzia californica r1.0 View SSRs Go to genome page
TCMPG20064 Eucalyptus grandis Egrandis1_0 View SSRs Go to genome page
TCMPG20065 Euryale ferox NA View SSRs Go to genome page
TCMPG20066 Fagopyrum esculentum r1.0 View SSRs Go to genome page
TCMPG20067 Fagopyrum tataricum V2.IGDBv2 View SSRs Go to genome page
TCMPG20068 Fagus sylvatica v1.3 View SSRs Go to genome page
TCMPG20069 Ficus carica ver.1 View SSRs Go to genome page
TCMPG20070 Fragaria vesca FraVesHawaii_1.0 View SSRs Go to genome page
TCMPG20071 Gardenia jasminoides NA View SSRs Go to genome page
TCMPG20072 Ginkgo biloba NA View SSRs Go to genome page
TCMPG20073 Glycine max Wm82.a2.v1 View SSRs Go to genome page
TCMPG20074 Gnetum montanum NA View SSRs Go to genome page
TCMPG20075 Gossypium herbaceum WHUv3.0rc View SSRs Go to genome page
TCMPG20076 Gossypium hirsutum BGI_v1 View SSRs Go to genome page
TCMPG20077 Gossypium hirsutum NBI_v1.1 View SSRs Go to genome page
TCMPG20078 Gossypium hirsutum HAU_v1 View SSRs Go to genome page
TCMPG20079 Gossypium hirsutum ZJU_v2.1 View SSRs Go to genome page
TCMPG20080 Gossypium hirsutum CRI_v1 View SSRs Go to genome page
TCMPG20081 Gossypium hirsutum CRI_ZM24_v1 View SSRs Go to genome page
TCMPG20082 Gossypium hirsutum WHU_v1 View SSRs Go to genome page
TCMPG20083 Gossypium hirsutum UTX_v2.1 View SSRs Go to genome page
TCMPG20084 Helianthus annuus HanXRQr2.0 View SSRs Go to genome page
TCMPG20085 Hevea brasiliensis ASM165405v1 View SSRs Go to genome page
TCMPG20086 Hibiscus cannabinus NA View SSRs Go to genome page
TCMPG20087 Hibiscus syriacus ASM638163v2 View SSRs Go to genome page
TCMPG20088 Hordeum vulgare IBSC_PGSB_r1 View SSRs Go to genome page
TCMPG20089 Jatropha curcas r4.5 View SSRs Go to genome page
TCMPG20090 Jatropha curcas RJC1_Hi-C View SSRs Go to genome page
TCMPG20091 Juglans regia Walnut_2.0 View SSRs Go to genome page
TCMPG20092 Juglans regia Chandler_2.0 View SSRs Go to genome page
TCMPG20093 Lactuca sativa Lsat_Salinas_v7 View SSRs Go to genome page
TCMPG20094 Lagenaria siceraria v1 View SSRs Go to genome page
TCMPG20095 Lemna minor NA View SSRs Go to genome page
TCMPG20096 Linum usitatissimum 200_v1.0 View SSRs Go to genome page
TCMPG20097 Lonicera japonica NA View SSRs Go to genome page
TCMPG20098 Lupinus albus 20171117r1-v1 View SSRs Go to genome page
TCMPG20099 Lupinus albus La_Amiga3.1 View SSRs Go to genome page
TCMPG20100 Lupinus angustifolius LupAngTanjil_v1.0 View SSRs Go to genome page
TCMPG20101 Macleaya cordata MC_HNAU_1.0 View SSRs Go to genome page
TCMPG20102 Manihot esculenta Manihot_esculenta_v6 View SSRs Go to genome page
TCMPG20103 Marchantia polymorpha v3.1 View SSRs Go to genome page
TCMPG20104 Marchantia polymorpha v5.1 View SSRs Go to genome page
TCMPG20105 Medicago sativa NA View SSRs Go to genome page
TCMPG20106 Miscanthus sinensis 497_v7.1 View SSRs Go to genome page
TCMPG20107 Momordica charantia ASM199503v1 View SSRs Go to genome page
TCMPG20108 Musa acuminata v2 View SSRs Go to genome page
TCMPG20109 Nelumbo nucifera v2.0 View SSRs Go to genome page
TCMPG20110 Nicotiana tabacum Ntab-TN90 View SSRs Go to genome page
TCMPG20111 Nyssa sinensis NA View SSRs Go to genome page
TCMPG20112 Ocimum basilicum NA View SSRs Go to genome page
TCMPG20113 Olea europaea europaea View SSRs Go to genome page
TCMPG20114 Olea europaea sylvestris View SSRs Go to genome page
TCMPG20115 Origanum majorana NA View SSRs Go to genome page
TCMPG20116 Origanum vulgare NA View SSRs Go to genome page
TCMPG20117 Oryza sativa Build_4.0 View SSRs Go to genome page
TCMPG20118 Panax ginseng v1.1 View SSRs Go to genome page
TCMPG20119 Panax ginseng v1 View SSRs Go to genome page
TCMPG20120 Panicum miliaceum NA View SSRs Go to genome page
TCMPG20121 Papaver somniferum ASM357369v1 View SSRs Go to genome page
TCMPG20122 Persea americana NA View SSRs Go to genome page
TCMPG20123 Phaseolus vulgaris G19833 View SSRs Go to genome page
TCMPG20124 Phaseolus vulgaris BAT93 View SSRs Go to genome page
TCMPG20125 Phoenix dactylifera unan_180126 View SSRs Go to genome page
TCMPG20126 Phyllostachys edulis NA View SSRs Go to genome page
TCMPG20127 Picea abies 1 View SSRs Go to genome page
TCMPG20128 Pinus taeda v1.01 View SSRs Go to genome page
TCMPG20129 Piper nigrum NA View SSRs Go to genome page
TCMPG20130 Pistacia vera PisVer_v2 View SSRs Go to genome page
TCMPG20131 Pisum sativum v1a View SSRs Go to genome page
TCMPG20132 Platycodon grandiflorus PGJ_1.0 View SSRs Go to genome page
TCMPG20133 Pogostemon cablin v1 View SSRs Go to genome page
TCMPG20134 Populus alba NA View SSRs Go to genome page
TCMPG20135 Populus tremula 2 View SSRs Go to genome page
TCMPG20136 Populus tremuloides 01b View SSRs Go to genome page
TCMPG20137 Populus trichocarpa Pop_tri_v3 View SSRs Go to genome page
TCMPG20138 Primula veris Annot6 View SSRs Go to genome page
TCMPG20139 Prunus mume P.mume_V1.0 View SSRs Go to genome page
TCMPG20140 Prunus persica Prunus_persica_NCBIv2 View SSRs Go to genome page
TCMPG20141 Prunus yedoensis r3.1 View SSRs Go to genome page
TCMPG20142 Punica granatum ASM765513v2 View SSRs Go to genome page
TCMPG20143 Pyrus bretschneideri v1.1 View SSRs Go to genome page
TCMPG20144 Pyrus communis v1.0 View SSRs Go to genome page
TCMPG20145 Pyrus communis v2.0 View SSRs Go to genome page
TCMPG20146 Quercus robur PM1N View SSRs Go to genome page
TCMPG20147 Raphanus sativus RSA_r1.0 View SSRs Go to genome page
TCMPG20148 Raphanus sativus Rs1.0 View SSRs Go to genome page
TCMPG20149 Raphanus sativus RSAskr_r1.0 View SSRs Go to genome page
TCMPG20150 Rhodiola crenulata NA View SSRs Go to genome page
TCMPG20151 Rhododendron simsii NA View SSRs Go to genome page
TCMPG20152 Ricinus communis 0.1 View SSRs Go to genome page
TCMPG20153 Rosa chinensis v2.0 View SSRs Go to genome page
TCMPG20154 Rosa chinensis v1.0 View SSRs Go to genome page
TCMPG20155 Rosa multiflora r2.0.braker1 View SSRs Go to genome page
TCMPG20156 Rosmarinus officinalis NA View SSRs Go to genome page
TCMPG20157 Salvia miltiorrhiza 2015 View SSRs Go to genome page
TCMPG20158 Salvia miltiorrhiza 2020 View SSRs Go to genome page
TCMPG20159 Salvia splendens NA View SSRs Go to genome page
TCMPG20160 Selaginella moellendorffii v1.0 View SSRs Go to genome page
TCMPG20161 Sesamum indicum v2.0 View SSRs Go to genome page
TCMPG20162 Setaria italica version2.0 View SSRs Go to genome page
TCMPG20163 Sinapis alba S.alba_v1 View SSRs Go to genome page
TCMPG20164 Siraitia grosvenorii NA View SSRs Go to genome page
TCMPG20165 Solanum chacoense v4.1 View SSRs Go to genome page
TCMPG20166 Solanum melongena r2.5.1 View SSRs Go to genome page
TCMPG20167 Solanum melongena 2020 View SSRs Go to genome page
TCMPG20168 Solanum tuberosum v3 View SSRs Go to genome page
TCMPG20169 Spatholobus suberectus ASM432916v1 View SSRs Go to genome page
TCMPG20170 Spinacia oleracea v1 View SSRs Go to genome page
TCMPG20171 Tectona grandis 2018 View SSRs Go to genome page
TCMPG20172 Tectona grandis 2019 View SSRs Go to genome page
TCMPG20173 Theobroma cacao V2 View SSRs Go to genome page
TCMPG20174 Tripterygium wilfordii ASM1340144v1 View SSRs Go to genome page
TCMPG20175 Triticum aestivum iwgsc_refseqv2.1 View SSRs Go to genome page
TCMPG20176 Trochodendron aralioides NA View SSRs Go to genome page
TCMPG20177 Vigna angularis Vigan1.1 View SSRs Go to genome page
TCMPG20178 Vigna angularis v1.a1 View SSRs Go to genome page
TCMPG20179 Vigna unguiculata ASM411807v1 View SSRs Go to genome page
TCMPG20180 Vitis vinifera V2_20 View SSRs Go to genome page
TCMPG20181 Vitis vinifera vCabSauv08_v1.1 View SSRs Go to genome page
TCMPG20182 Zea mays Zm-B73-REFERENCE-NAM-5.0 View SSRs Go to genome page
TCMPG20183 Zea mays Zm-Mo17-REFERENCE-CAU-1.0_Zm00014a.1 View SSRs Go to genome page
TCMPG20184 Zea mays Zm-W22-REFERENCE-NRGENE-2.0_Zm00004b.1 View SSRs Go to genome page
TCMPG20185 Ziziphus jujuba ZizJuj_1.1 View SSRs Go to genome page
TCMPG20186 Zostera marina V2 View SSRs Go to genome page
TCMPG20187 Strobilanthes cusia NA View SSRs Go to genome page
TCMPG20188 Senna tora ASM1485142v1 View SSRs Go to genome page
TCMPG20189 Artemisia annua ASM311234v1 View SSRs Go to genome page
TCMPG20190 Chrysanthemum nankingense v2.0 View SSRs Go to genome page
TCMPG20191 Cinnamomum kanehirae ASBRC_Ckan_1.0 View SSRs Go to genome page
TCMPG20192 Bombax ceiba NA View SSRs Go to genome page
TCMPG20193 Toona sinensis V1 View SSRs Go to genome page
TCMPG20194 Chiococca alba NA View SSRs Go to genome page
TCMPG20195 Acer truncatum NA View SSRs Go to genome page
Copyright © 2021 TCMPG. All Rights Reserved.