AGD Asteraceae Genome Database

SSR Finder

Identify SSRs in user uploaded FASTA file and view SSRs of the AGD plant genome available on our website.
The identification of SSRs was done using Batch_SSR_Finder.pl (Song et al. 2021) with default parameters.
Web SSR Finder
Upload file (max. 10M)
SSR search parameters
SSR motif length
min. no. of repetitions
1
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add further fields
Max. length of sequence between two SSRs to register as compound SSR
 
View SSRs of the Asteraceae genome available on our website.
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Dev Tool
python django blast jbrowse interpro primer3 plantismash hmmer crisprcas sequenceserver