Expression matrix file (tab-separated txt file, necessary)

Upload file (max. 10M)
Download example file.

X-axis grouping information file (tab-separated txt file, optional)

Upload file (max. 10M)
Download example file.

Y-axis grouping information file (tab-separated txt file, optional)

Upload file (max. 10M)
Download example file.

Setting parameters

Figure size
width: ; height:
Figure quality
dpi:
Font
Times New Roman Arial
Font size
row: ; column:
Color
lower: center: higher:
Number of colors (the larger the smoother):
Data standardization
z-score: row column original value
standard_scale: row column original value
Name to be displayed
row column both none
Show values
true none
Clustering direction
row column both none
Clustering method
single complete average weighted centroid median
Distance method
correlation euclidean sqeuclidean jaccard cosine hamming cityblock chebyshev canberra braycurtis minkowski kulsinski
Show dendrogram
row column both none
Dendrogram size
row: ; column:
Number of clusters
row: ; column:
Size of gap between clusters
row: ; column:
Gridlines (default: none)
color: ; width:
Download format of the figure
svg pdf png tif jpg

Instruction

Introduction
Heatmap, a common visualization method for converting matrix data into color shades, where each cell corresponds to some attribute of the data and the values of the attribute are converted into different shades and filled with cells by color mapping.
Data preparation
Expression matrix file:
This is the file containing the expression matrix data. The first row is the sample name, the first column is the gene name, and the rest is the data.
X-axis grouping information file:
This is the file that contains the sample grouping data (optional). The name and number of samples in the first column should be consistent with the previous expression matrix data, and each subsequent column should contain the grouping name, with a maximum of three grouping information.
Y-axis grouping information file:
This is the file containing the gene grouping data (optional). The name and number of genes in the first column should be consistent with the previous expression matrix data, and each subsequent column should contain the grouping name, with a maximum of three grouping information.
Note:
1. Genes and samples can not have duplicate names.
2. The file is a tab-delimited txt file.
The program has strict requirements for input formats. Please be sure to review the description above and download the example file.
Example of results