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TCM Plant Genome Database
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HmmSearch
Biosequence analysis using profile hidden Markov Models.
This analysis was done using
hmmsearch
in the HMMER software suite(version 3.3.2,
http://hmmer.org
).
profile-HMM vs protein sequence database
Select a profile-HMM
- Select -
Chal_sti_synt_C
Chal_sti_synt_N
HSP70
K-box
LOB
Lipoxygenase
MEF2_binding
Myb_DNA-binding
SRF-TF
Terpene_synth
UDPGT
WRKY
bHLH-MYC_N
p450
OR
Upload a profile-HMM file (max. 10M)
Select sequence database(s)
Select
Check All
Abies_alba_1_1
Abrus_precatorius_Abrus_2018
Acer_truncatum
Actinidia_chinensis_HongYang_v2
Actinidia_chinensis_HongYang_v3
Actinidia_chinensis_Red5
Actinidia_eriantha_White
Allium_sativum
Ananas_comosus
Antirrhinum_majus_IGDBv1
Apium_graveolens
Aquilaria_sinensis
Arachis_hypogaea_David
Arachis_hypogaea_Zhuang
Artocarpus_altilis
Artocarpus_heterophyllus
Asparagus_officinalis_CHR_V1.1
Atalantia_buxifolia
Averrhoa_carambola
Beta_vulgaris_RefBeet-1.2.2
Bombax_ceiba
Brassica_juncea_Varuna
Brassica_juncea_tumida
Brassica_nigra_Ni100
Brassica_nigra_YZ12151
Brassica_oleracea_var._botrytis_HDEM
Brassica_oleracea_var._capitata_JZSv1
Brassica_oleracea_var._capitata_JZSv2
Camellia_sinensis_CSS
Camellia_sinensis_CSS_20200506
Camellia_sinensis_CSS_v1.2
Camellia_sinensis_LJ_43
Camptotheca_acuminata_v2.4
Cannabis_sativa_cs10
Capsicum_annuum_CM334
Capsicum_annuum_Zunla
Carica_papaya_Papaya1.0
Castanea_mollissima_HBY_2
Casuarina_equisetifolia
Catharanthus_roseus_v2
Chiococca_alba
Chrysanthemum_nankingense_v2.0
Cinnamomum_kanehirae_ASBRC_Ckan_1.0
Citrus_grandis_HWB
Citrus_medica_XZ
Citrus_reticulata_MSYJ
Citrus_sinensis
Citrus_unshiu_CUMW_v1.0
Cocos_nucifera
Coffea_arabica_Cara_1.0
Corchorus_capsularis_CCACVL1_1.0
Corchorus_olitorius_COLO4_1.0
Coriandrum_sativum
Cucumis_melo_ASM31304v1
Cucumis_sativus_V3
Cucurbita_moschata_v1
Cucurbita_pepo_ASM280686v2
Cuscuta_australis
Dalbergia_odorifera
Daucus_carota_ASM162521v1
Dianthus_caryophyllus_r1.0
Dionaea_muscipula
Dioscorea_dumetorum_v1.0
Diospyros_lotus_r1.1
Elaeis_guineensis_EG5
Erigeron_breviscapus
Eriobotrya_japonica
Eschscholzia_californica_r1.0
Eucalyptus_grandis_Egrandis1_0
Euryale_ferox
Fagopyrum_esculentum_r1.0
Fagopyrum_tataricum_V2.IGDBv2
Fagus_sylvatica_v1.3
Ficus_carica_ver.1
Fragaria_vesca_FraVesHawaii_1.0
Gardenia_jasminoides
Ginkgo_biloba
Glycine_max_Wm82.a2.v1
Gnetum_montanum
Gossypium_herbaceum_WHUv3.0rc
Gossypium_hirsutum_BGI_v1
Gossypium_hirsutum_CRI_ZM24_v1
Gossypium_hirsutum_CRI_v1
Gossypium_hirsutum_HAU_v1
Gossypium_hirsutum_NBI_v1.1
Gossypium_hirsutum_UTX_v2.1
Gossypium_hirsutum_WHU_v1
Gossypium_hirsutum_ZJU_v2.1
Helianthus_annuus_HanXRQr2.0
Hevea_brasiliensis_ASM165405v1
Hibiscus_cannabinus
Hibiscus_syriacus_ASM638163v2
Hordeum_vulgare_IBSC_PGSB_r1
Jatropha_curcas_RJC1_Hi-C
Jatropha_curcas_r4.5
Juglans_regia_Chandler_2.0
Juglans_regia_Walnut_2.0
Lactuca_sativa_Lsat_Salinas_v7
Lagenaria_siceraria_v1
Lemna_minor
Linum_usitatissimum_200_v1.0
Lonicera_japonica
Lupinus_albus_20171117r1-v1
Lupinus_albus_La_Amiga3.1
Lupinus_angustifolius_LupAngTanjil_v1.0
Macleaya_cordata_MC_HNAU_1.0
Manihot_esculenta_Manihot_esculenta_v6
Marchantia_polymorpha_v3.1
Marchantia_polymorpha_v5.1
Medicago_sativa
Miscanthus_sinensis_497_v7.1
Momordica_charantia_ASM199503v1
Musa_acuminata_v2
Nelumbo_nucifera_v2.0
Nicotiana_tabacum_Ntab-TN90
Nyssa_sinensis
Ocimum_basilicum
Olea_europaea_europaea
Olea_europaea_sylvestris
Origanum_majorana
Origanum_vulgare
Oryza_sativa_Build_4.0
Panax_ginseng_v1
Panax_ginseng_v1.1
Panicum_miliaceum
Papaver_somniferum_ASM357369v1
Persea_americana
Phaseolus_vulgaris_BAT93
Phaseolus_vulgaris_G19833
Phoenix_dactylifera_unan_180126
Phyllostachys_edulis
Picea_abies_1.0
Pinus_taeda_v1.01
Piper_nigrum
Pistacia_vera_PisVer_v2
Pisum_sativum_v1a
Platycodon_grandiflorus_PGJ_1.0
Pogostemon_cablin_v1
Populus_tremula_02
Populus_tremuloides_01b
Populus_trichocarpa_Pop_tri_v3
Primula_veris_Annot6
Prunus_mume_P.mume_V1.0
Prunus_persica_Prunus_persica_NCBIv2
Prunus_yedoensis_r3.1
Punica_granatum_ASM765513v2
Pyrus_bretschneideri_v1.1
Pyrus_communis_v1.0
Pyrus_communis_v2.0
Quercus_robur_PM1N
Raphanus_sativus_RSA_r1.0
Raphanus_sativus_RSAskr_r1.0
Raphanus_sativus_Rs1.0
Rhodiola_crenulata
Rhododendron_simsii
Ricinus_communis_0.1
Rosa_chinensis_v1.0
Rosa_chinensis_v2.0
Rosa_multiflora_r2.0.braker1
Salvia_miltiorrhiza_2015
Salvia_miltiorrhiza_2020
Salvia_splendens
Selaginella_moellendorffii_v1.0
Sesamum_indicum_v2.0
Setaria_italica_version2.0
Sinapis_alba_S.alba_v1
Siraitia_grosvenorii
Solanum_chacoense_v4.1
Solanum_melongena_2020
Solanum_melongena_r2.5.1
Solanum_tuberosum_v3
Spatholobus_suberectus_ASM432916v1
Spinacia_oleracea_v1
Tectona_grandis_2018
Tectona_grandis_2019
Theobroma_cacao_V2
Toona_sinensis_V1
Tripterygium_wilfordii_ASM1340144v1
Triticum_aestivum_iwgsc_refseqv2.1
Trochodendron_aralioides
Vigna_angularis_Vigan1.1
Vigna_angularis_v1.a1
Vigna_unguiculata_ASM411807v1
Vitis_vinifera_V2_20
Vitis_vinifera_vCabSauv08_v1.1
Zea_mays_Zm-B73-REFERENCE-NAM-5.0
Zea_mays_Zm-Mo17-REFERENCE-CAU-1.0_Zm00014a.1
Zea_mays_Zm-W22-REFERENCE-NRGENE-2.0_Zm00004b.1
Ziziphus_jujuba_ZizJuj_1.1
Zostera_marina_V2
OR
Upload a protein sequence file(max. 10M)
Cut-offs
Significance E-values:
Sequence
Hit
Report E-values:
Sequence
Hit
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